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From CAGT

TRDB Overview

Tandem Repeats Database (TRDB) is a public repository of information on tandem repeats in genomic DNA and contains a variety of tools for their analysis. These currently include, the Tandem Repeats Finder algorithm, query and filtering capabilities for finding particular repeats of interest, repeat clustering algorithms based on sequence similarity, polymorphism prediction based on common patterns of mutation, PCR primer selection, and data download in a variety of formats. In addition, TRDB serves as a centralized research workbench. It provides storage space for results of analysis and permits collaborators to privately share their data and analysis.


TRDB images

alignment of a tandem repeat to its master pattern
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alignment of a tandem repeat to its master pattern
a group of tandem repeats displayed in our browser with some annotations shown
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a group of tandem repeats displayed in our browser with some annotations shown
a set of filters is applied to a set
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a set of filters is applied to a set
repeats browser view showing a small set of available columns
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repeats browser view showing a small set of available columns
an example of a mulptiple alignment
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an example of a mulptiple alignment
a view of sequence information and associated annotation files
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a view of sequence information and associated annotation files
various tools inside TRDB
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various tools inside TRDB
set history make tracking changes easy, such as merges, filters and clustering
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set history make tracking changes easy, such as merges, filters and clustering
Protein Engineering