Home      Labs      Publications      People      Tools   


Publications 2006 - CAGT

  • Murali TM, Wu CJ, Kasif S. The art of gene function prediction. Nat Biotechnol. 2006 Dec;24(12):1474-5. PMID: 17160037
  • Gustafson AM, Snitkin ES, Parker SCJ, et al. Towards the identification of essential genes using targeted genome sequencing and comparative analysis. BMC Genomics 7:Art. No. OCT 19 2006 [Abstract][Full Text]

  • Lee S, Kasif S. The complete genome sequence of a dog: a perspective. Bioessays. 2006 Jun;28(6):569-73. PMID: 16700068 [Abstract]
  • Rachlin J, Cohen DD, Cantor C, Kasif S. Biological context networks: a mosaic view of the interactome. Nature/Embo. Mol Syst Biol. 2006;2:66. Epub 2006 Nov 28. PMID: 17130868 [Abstract][Full Text]
  • Mak, D., Gelfand, Y., Benson, G. (2006) Indel seeds for homology search. Bioinformatics 2006 Jul. 15; 22(14):e341-9 [Abstract][Full Text]
  • Yevgeniy Gelfand, Alfredo Rodriguez and Gary Benson TRDB—The Tandem Repeats Database. Nucleic Acids Research, 2006, Vol. 00, Database issue D1-D8 doi:10.1093/nar/gkl1013 [Abstract][Full Text]
  • Holloway DT, Kon MA, DeLisi C. Machine Learning methods for transcription data integration. IBM Journal of Research and Development 50(6): 631-643 Nov 2006 [Full Text]

  • Snitkin ES, Gustafson AM, Mellor J, et al. Comparative assessment of performance and genome dependence among phylogenetic profiling methods. BMC Bioinformatics 7: Art. No. 420 Sep 27 2006 [Abstract][Full Text]

  • Wu J, Hu ZJ, DeLisi C. Gene annotation and network inference by phylogenetic profiling. BMC Bioinformatics 7: Art No. 80 Feb 17 2006 [Abstract][Full Text]
  • Mellor J. and DeLisi C. An equilibrium partitioning model connecting gene expression and cis-motif content Vol. 00 no. 00 2006, pages 1–7 doi:10.1093/bioinformatics/btl253 [Abstract][Full Text]
  • Jason Raymond and Daniel Segrè, The effect of oxygen on biochemical networks and the evolution of complex life, Science (2006), 311, 1764-1767, [PDF] [Science] [Perspective] [Interactive Network]

Protein Engineering