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From CAGT
PromoSer - submit a job
You can now
download
a full set of promoters, view the available genomes using the
Genome Browser
, or search below.
Enter a
list of GenBank accessions
or
FASTA sequences
for which you need the promoters, or a
list of genomic loci
to extract:
Extract
bases upstream of TSS and
Extract
bases from TSS and downstream
Require
Quality at least
0
1
2
3
4
and Support at least
If the promoter region contains known
repeats
:
ignore them
mark them using lower case
mark them with an N
In case of
alternative promoters
, return:
all of them
only the one that is best supported and is 5' most
only the one that starts 3' most (most conservative extension)
only the one that starts 5' most (most aggressive extension)
only the one that is the closest upstream to the sequence's 5' end
ignore all extension info and return the immediate upstream region
Exclude
the following results if they occur:
entries that map to more than one locus
entries that could not be aligned well and were guessed
entries that map to the same cluster (keeping only one representative of that cluster and removing duplicate promoters)
If the promoter region
overlaps
the transcription range of another region:
ignore and return the requested range fully
stop at the boundary of the next upstream region on the same strand
stop at the boundary of the next upstream region on either strand
If the promoter region has
assembly gaps:
ignore them and return the requested range fully
stop at the boundary of the nearest upstream gap
If you would like to
retrieve
a previous result, enter its ID here
Please direct your comments and questions
here
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