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r
d<-read.table("hg19.2.7.7.full.only.one.TR.in.interval.patsize.ge.7.stats.txt", sep="\t", header=TRUE) 
pdf(file="HG19 reference TR intervals with only one TR and pattern size ge 7.pdf", width = 10, height = 8, pointsize = 14, bg = "white")
hist(d$smallestPatternSize,breaks=c(0:max(d$smallestPatternSize)),xlim=c(0,100),ylim=NULL, main="TR intervals with only one TR and Pattern Size ge 7\nDistribution of Pattern Sizes\n(limited to range [0-100])", xlab = "Pattern Size", ylab = "Count ")
hist(d$lowestAvgScore,breaks=seq(0,max(d$lowestAvgScore),0.1),xlim=c(0,2),ylim=NULL, main="TR intervals with only one TR and Pattern Size ge 7\nDistribution of Per Position Average Alignment Scores\n93% above 1.2", xlab = "Average Score", ylab = "Count ")
hist(d$shortestArray,breaks=seq(0,max(d$shortestArray)),xlim=c(0,300),ylim=NULL, main="TR intervals with only one TR and Pattern Size ge 7\nDistribution of Array Length\n(limited to range [0-300])", xlab = "Array Length", ylab = "Count ")
dev.off()


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