From CAGT

Examples in the paper:

Here are some examples with links to its GENEVA page.

Examples of fully conserved genes

• subunits of ATP synthetase F1: atpA, atpG, atpD
• ribosomal protein:rps4

Examples of segmentally variable genes(SVGs)

• SVG with one variable region: HP0051
  
• SVG with two variable regions vacB
  


• Histidine kinase
  • MCP genes in V.cho


• Transporter genes and outer membrane proteins
  • multi-drug resistance genes:hetA,spaB
  • phage receptor BtuB: example


• DNA/RNA processing genes
  • DNA gyrase B: example
  • DNA topoisomerase I: example
  • DNA polymerase I: polA in H.pylori, polA in E.coli
  • prolyl-tRNA synthetase: example
  • IS 30 family: examples
  • cytosine-specifc DNA methyltransferase: example


• Carbohydrate active enzymes
  • glycosyltransferaes family2: spsA in B.sub, another one in S.pneu (more in S.penu)


• Hypothetical genes
  • mechanosensitive channel proteins: b1330 in E.coli,yhdY in B.sub


• Paralogous SVGs
  • methionyl aminopeptidase family(M24):HP1299, HP1037