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From CAGT

Cister : Cis-element Cluster Finder

Instructions

Paste a DNA sequence into the box or enter a GenBank identifier:

OR upload a DNA sequence from a file:
(Optional) Set subsequence From: To:
Choose a bunch of cis-elements:
TATA Sp1 CRE ERE NF-1 E2F Mef-2 Myf
CCAAT AP-1 Ets Myc GATA LSF SRF Tef
AND / OR enter your own cis-elements:
(Get cis-element matrices from TRANSFAC - free registration required)

AND / OR upload cis-elements from a file:
Parameters: (use the defaults if in doubt)
a average distance between motifs within a cluster
b average number of motifs in a cluster
g average distance between clusters
w half-width of sliding window for local base composition
Motif probability threshold
Pseudocount

Contact: Martin Frith
Last modified: Tuesday, 13-Apr-2004 19:47:58 EDT

Protein Engineering